Helden, Jacques: search on Z-Library

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1

Pulmonary Infection Due to Mycobacterium goodii in a Spotted Hyena (Crocuta crocuta) from South Africa

van Helden, Paul D., van Pittius, Nico C. Gey, Warren, Robin M., Michel, Anita, Hlokwe, Tiny, Morar, Darshana, Godfroid, Jacques, du Plessis, Elizabeth C., Bengis, Roy

Journal:

Journal of Wildlife Diseases

Year:

2008

Language:

english

File:

PDF, 873 KB

english, 2008

2

Evaluation of clustering algorithms for protein-protein interaction networks

Sylvain Brohée, Jacques van Helden

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.26 MB

english, 2006

3

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || From Bacterial to Microbial Ecosystems (Metagenomics)

van Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 174 KB

english, 2012

4

Redefining fundamental concepts of transcription initiation in bacteria

MejÃa-Almonte, Citlalli, Busby, Stephen J. W., Wade, Joseph T., van Helden, Jacques, Arkin, Adam P., Stormo, Gary D., Eilbeck, Karen, Palsson, Bernhard O., Galagan, James E., Collado-Vides, Julio

Journal:

Nature Reviews Genetics

Year:

2020

File:

PDF, 1.94 MB

2020

5

The powerful law of the power law and other myths in network biology

Lima-Mendez, Gipsi, van Helden, Jacques

Journal:

Molecular BioSystems

Year:

2009

Language:

english

File:

PDF, 2.08 MB

english, 2009

6

Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences

Defrance, Matthieu, Janky, Rekin's, Sand, Olivier, van Helden, Jacques

Journal:

Nature Protocols

Year:

2008

Language:

english

File:

PDF, 963 KB

english, 2008

7

Sequanix: A Dynamic Graphical Interface for Snakemake Workflows

Desvillechabrol, Dimitri, Legendre, Rachel, Rioualen, Claire, Bouchier, Christiane, van Helden, Jacques, Kennedy, Sean, Cokelaer, Thomas

Journal:

Year:

2018

Language:

english

File:

PDF, 437 KB

english, 2018

8

Integrating sequence, evolution and functional genomics in regulatory genomics

Martin Vingron, Alvis Brazma, Richard Coulson, Jacques van Helden…

Journal:

Year:

2009

Language:

english

File:

PDF, 965 KB

english, 2009

9

Machine learning techniques to identify putative genes involved in nitrogen catabolite repression in the yeastSaccharomyces cerevisiae

Kevin Kontos,Patrice Godard,Bruno André,Jacques van Helden…

Journal:

BMC Proceedings

Year:

2008

Language:

english

File:

PDF, 299 KB

english, 2008

10

RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach

Taboada-Castro, Hermenegildo, Castro-MondragÃ³n, Jaime Abraham, Aguilar-Vera, Alejandro, HernÃ¡ndez-Ãlvarez, Alfredo JosÃ©, van Helden, Jacques, EncarnaciÃ³n-Guevara, Sergio

Journal:

Frontiers in Microbiology

Year:

2020

File:

PDF, 2.52 MB

2020

11

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || Predicting Metabolic Pathways by Sub-network Extraction

Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 577 KB

english, 2012

12

Modularity of the Transcriptional Response of Protein Complexes in Yeast

Nicolas Simonis, Didier Gonze, Chris Orsi, Jacques van Helden, Shoshana J. Wodak

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 2.40 MB

english, 2006

13

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || Using the NeAT Toolbox to Compare Networks to Networks, Clusters to Clusters, and Network to Clusters

van Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 348 KB

english, 2012

14

Confidence intervals are no salvation from the alleged fickleness of the P value

van Helden, Jacques

Journal:

Year:

2016

Language:

english

File:

PDF, 2.31 MB

english, 2016

15

Sub-microscopic Plasmodium falciparum infections in matched peripheral, placental and umbilical cord blood samples from asymptomatic Congolese women at delivery

Mbouamboua, Yvon, Koukouikila-Koussounda, Félix, Ntoumi, Francine, Adukpo, Selorme, Kombo, Michael, Vouvoungui, Christevy, van Helden, Jacques, Kobawila, Simon Charles

Journal:

Year:

2019

Language:

english

File:

PDF, 695 KB

english, 2019

16

A novel, base-labile fluorous amine protecting group: synthesis and use as a tag in the purification of synthetic peptides

Peter C de Visser, Marcel van Helden, Dmitri V Filippov, Gijsbert A van der Marel, Jan W Drijfhout, Jacques H van Boom, Daan Noort, Herman S Overkleeft

Journal:

Tetrahedron Letters

Year:

2003

Language:

english

File:

PDF, 138 KB

english, 2003

17

A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs

Thomas-Chollier, Morgane, Darbo, Elodie, Herrmann, Carl, Defrance, Matthieu, Thieffry, Denis, van Helden, Jacques

Journal:

Nature Protocols

Year:

2012

Language:

english

File:

PDF, 3.35 MB

english, 2012

18

RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections

Castro-Mondragon, Jaime Abraham, Jaeger, Sébastien, Thieffry, Denis, Thomas-Chollier, Morgane, van Helden, Jacques

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 8.61 MB

english, 2017

19

Immunoproteasome-Deficiency Has No Effects on NK Cell Education, but Confers Lymphocytes into Targets for NK Cells in Infected Wild-Type Mice

van Helden, Mary J. G., de Graaf, Natascha, Bekker, Cornelis P. J., Boog, Claire J. P., Zaiss, Dietmar M. W., Sijts, Alice J. A. M., Zimmer, Jacques

Journal:

Year:

2011

Language:

english

File:

PDF, 912 KB

english, 2011

20

Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution

Rekin's Janky, Jacques van Helden

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 2.14 MB

english, 2008

21

Contribution of the geneextramacrochaetaeto the precise positioning of bristles inDrosophila

Françoise Huang, Jacques Helden, Christine Dambly-Chaudière, Alain Ghysen

Journal:

Development Genes and Evolution

Year:

1995

Language:

english

File:

PDF, 919 KB

english, 1995

22

Retrouver les origines du SARS-CoV-2 dans les phylogÃ©nies de coronavirus

Sallard, Erwan, Halloy, JosÃ©, Casane, Didier, van Helden, Jacques, Decroly, Ãtienne

Journal:

Year:

2020

File:

PDF, 7.23 MB

2020

23

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || Bacterial Molecular Networks: Bridging the Gap Between Functional Genomics and Dynamical Modelling

Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 95 KB

english, 2012

24

Inferring Meaningful Pathways in Weighted Metabolic Networks

Didier Croes, Fabian Couche, Shoshana J. Wodak, Jacques van Helden

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 253 KB

english, 2006

25

Clusters of Conserved Beta Cell Marker Genes for Assessment of Beta Cell Phenotype

Martens, Geert A., Jiang, Lei, Hellemans, Karine H., Stangé, Geert, Heimberg, Harry, Nielsen, Finn C., Sand, Olivier, Van Helden, Jacques, Gorus, Frans K., Pipeleers, Daniel G., Tjwa, Marc

Journal:

Year:

2011

Language:

english

File:

PDF, 1.47 MB

english, 2011

26

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || Bacterial Interactomes: From Interactions to Networks

van Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 362 KB

english, 2012

27

Transcriptional Profiling of Midguts Prepared from Trypanosoma/T. congolense-Positive Glossina palpalis palpalis Collected from Two Distinct Cameroonian Foci: Coordinated Signatures of the Midguts’ Remodeling As T. congolense-Supportive Niches

Tsagmo Ngoune, Jean M., Njiokou, Flobert, Loriod, Béatrice, Kame-Ngasse, Ginette, Fernandez-Nunez, Nicolas, Rioualen, Claire, van Helden, Jacques, Geiger, Anne

Journal:

Frontiers in Immunology

Year:

2017

Language:

english

File:

PDF, 1.17 MB

english, 2017

28

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || Extracting Regulatory Networks of Escherichia coli from RegulonDB

Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 845 KB

english, 2012

29

Network Analysis Tools: from biological networks to clusters and pathways

Brohée, Sylvain, Faust, Karoline, Lima-Mendez, Gipsi, Vanderstocken, Gilles, van Helden, Jacques

Journal:

Bioentrepreneur

Year:

2008

Language:

english

File:

PDF, 900 KB

english, 2008

30

Transcriptional regulation of protein complexes in yeast

Nicolas Simonis, Jacques van Helden, George N Cohen, Shoshana J Wodak

Journal:

Year:

2004

Language:

english

File:

PDF, 438 KB

english, 2004

31

PO 8249âSUBMICROSCOPIC PLASMODIUM FALCIPARUM INFECTIONS IN MATCHED PERIPHERAL, PLACENTAL AND UMBILICAL CORD BLOOD SAMPLES FROM CONGOLESE WOMEN AT DELIVERY

Mbouamboua, Yvon, Koukouikila-Koussounda, FÃ©lix, Helden, Jacques Van, Ntoumi, Francine

Journal:

BMJ Global Health

Year:

2019

File:

PDF, 72 KB

2019

32

Prediction of metabolic pathways from genome-scale metabolic networks

Karoline Faust, Didier Croes, Jacques van Helden

Journal:

Year:

2011

Language:

english

File:

PDF, 1.93 MB

english, 2011

33

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || The Degree Distribution of Networks: Statistical Model Selection

Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 483 KB

english, 2012

34

The chromatin environment shapes DNA replication origin organization and defines origin classes

Cayrou, Christelle, Ballester, Benoit, Peiffer, Isabelle, Fenouil, Romain, Coulombe, Philippe, Andrau, Jean-Christophe, van Helden, Jacques, Méchali, Marcel

Journal:

Genome Research

Year:

2015

Language:

english

File:

PDF, 1.64 MB

english, 2015

35

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || Browsing Metabolic and Regulatory Networks with BioCyc

Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 931 KB

english, 2012

36

Hydroxychloroquine treatment downregulates systemic interferon activation in primary Sjögren’s syndrome in the JOQUER randomized trial

Bodewes, Iris L A, Gottenberg, Jacques-Eric, van Helden-Meeuwsen, Cornelia G, Mariette, Xavier, Versnel, Marjan A

Journal:

Year:

2019

Language:

english

File:

PDF, 151 KB

english, 2019

37

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || Analyzing Biological Data Using R: Methods for Graphs and Networks

Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 636 KB

english, 2012

38

Representing and Analysing Molecular and Cellular Function Using the Computer

Helden, Jacques van, Naim, Avi, Mancuso, Renato, Eldridge, Mattew, Wernisch, Lorenz, Gilbert, David, Wodak, Shoshana J.

Journal:

Biological Chemistry

Year:

2000

Language:

english

File:

PDF, 936 KB

english, 2000

39

Approaches to visualisation in bioinformatics: from dendrograms to Space Explorer

Michael Schroeder, David Gilbert, Jacques van Helden, Penny Noy

Journal:

Information Sciences

Year:

2001

Language:

english

File:

PDF, 1.93 MB

english, 2001

40

In silicoidentification of NF-kappaB-regulated genes in pancreatic beta-cells

Najib Naamane, Jacques van Helden, Decio L Eizirik

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 598 KB

english, 2007

41

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || Protein Complex Prediction with RNSC

van Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 620 KB

english, 2012

42

In Silico Identification of Putative Regulatory Sequence Elements in the 5′-Untranslated Region of Genes That Are Expressed during Male Gametogenesis

Raymond Jozef Maurinus Hulzink, Han Weerdesteyn, Anton Felix Croes, Tom Gerats, Marinus Maria Antonius van Herpen and Jacques van Helden

Journal:

PLANT PHYSIOLOGY

Year:

2003

Language:

english

File:

PDF, 1.32 MB

english, 2003

43

Integrating Bacterial ChIP-seq and RNA-seq Data With SnakeChunks

Rioualen, Claire, Charbonnier-Khamvongsa, Lucie, Collado-Vides, Julio, van Helden, Jacques

Journal:

Current Protocols in Bioinformatics

Year:

2019

Language:

english

File:

PDF, 2.10 MB

english, 2019

44

Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules

Turatsinze, Jean-Valery, Thomas-Chollier, Morgane, Defrance, Matthieu, van Helden, Jacques

Journal:

Nature Protocols

Year:

2008

Language:

english

File:

PDF, 876 KB

english, 2008

45

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || Prokaryote Genome Fluidity: Toward a System Approach of the Mobilome

Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 316 KB

english, 2012

46

Analyzing multiple data sets by interconnecting RSAT programs via SOAP Web services—an example with ChIP-chip data

Sand, Olivier, Thomas-Chollier, Morgane, Vervisch, Eric, van Helden, Jacques

Journal:

Nature Protocols

Year:

2008

Language:

english

File:

PDF, 230 KB

english, 2008

47

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || MAVisto: A Tool for Biological Network Motif Analysis

van Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 901 KB

english, 2012

48

In vitro screening of a FDA approved chemical library reveals potential inhibitors of SARS-CoV-2 replication

Touret, Franck, Gilles, Magali, Barral, Karine, NougairÃ¨de, Antoine, van Helden, Jacques, Decroly, Etienne, de Lamballerie, Xavier, Coutard, Bruno

Journal:

Scientific Reports

Year:

2020

File:

PDF, 1.98 MB

2020

49

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 || Using MCL to Extract Clusters from Networks

Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 192 KB

english, 2012

50

[Methods in Molecular Biology] Bacterial Molecular Networks Volume 804 ||

van Helden, Jacques, Toussaint, Ariane, Thieffry, Denis

Year:

2012

Language:

english

File:

PDF, 11.94 MB

english, 2012

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